miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST046438
species: Pinus taeda
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCC

miRNA*
AATGTTGTCTGGCTCGACT

mismatches: 4
bulges: 0

View larger
pre-miRNA
GGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCC

dot-bracket secondary structure
((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..))))))


SIMILARITIES
miRBase pta-MIR166a: 1e-36

PMRD pta-miR166a: 1e-36

microPC miR166: 1e-36
UniProt no hits

RFAM mir-166: 0.0002

Identical with: pta-MIR166a from miRBase (MNEST039420)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;